PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34076-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 383aa    MW: 42141.4 Da    PI: 8.1771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34076-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-064465223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+k+Fs  ++L++H+r H
  TRIUR3_34076-P1 44 QCQLCSKVFSACDSLRKHMREH 65
                     7*******************99 PP
2zf-C2H215.45.4e-05297319123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ CgksF + s L  H+r H
  TRIUR3_34076-P1 297 HQCNACGKSFGSGSALGGHMRWH 319
                      79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.454370IPR007087Zinc finger, C2H2
SMARTSM003550.0344365IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-44466IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-44465IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-104465No hitNo description
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-10292319No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6295319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.7E-8296320IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.803297324IPR007087Zinc finger, C2H2
SMARTSM003551.9297319IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSLHWRKVKQ PKGTPSPPAT VVDLNVSLLS PSDEEILLWF SGTQCQLCSK VFSACDSLRK  60
HMREHGEKNV LSKPVEEAAG LMEARAIAGG GCNVLLSPVK RKRSKRGAPP LKFNEMDAAA  120
SLLLLSEHSS KISANEDCYT EVMDSLPPNV SKDVKLNAFD HQLVRSAEFK KPKGCKCSSY  180
DICYGQCVMD TNLIPNVAKE KTSIPNIAKN SACEDCFGQC EKDSSLIPNV DKKERSLMAN  240
IPEKDNTLIS IVLEEVELNV LDHVLAGDAE LRKKQRTDNS VEMKCADLSA AVKVKRHQCN  300
ACGKSFGSGS ALGGHMRWHL PRSNDRRHGF AESPDSVVMK EQKQKLELGA KFLDLRLPGL  360
TDITTFSGLK SEPEPWRVAS SVH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496280.0AK249628.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40p20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164841.10.0uncharacterized protein LOC109750291
TrEMBLM7YEB40.0M7YEB4_TRIUA; Uncharacterized protein
STRINGTRIUR3_34076-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229