PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34186-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 175aa    MW: 18802.2 Da    PI: 6.5012
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34186-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.2e-38171171101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C ++Cvlapyfpa++p+++anvh++FGasnv +ll++lp eer +a++++++eA++r  dPvyG++gvi++lq+++  ++ el
  TRIUR3_34186-P1  17 RCAACKYLRRRCGHGCVLAPYFPASRPRRYANVHRVFGASNVARLLQSLPVEERAQAAETMAMEAQWRGGDPVYGCAGVINRLQEEILATQCEL 110
                      6********************************************************************************************* PP

           DUF260  95 allkeel 101
                      a+++++l
  TRIUR3_34186-P1 111 ARTRAQL 117
                      *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.95216117IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-3817114IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
EVQEEEEEGG GSGNPRRCAA CKYLRRRCGH GCVLAPYFPA SRPRRYANVH RVFGASNVAR  60
LLQSLPVEER AQAAETMAME AQWRGGDPVY GCAGVINRLQ EEILATQCEL ARTRAQLAIV  120
VAHGAQQAPP PSAPPPPAPS PLPAGGHRVA GMQRQGGQQD APLIDPDEFL DLDGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-32111177111LOB family transfactor Ramosa2.1
5ly0_B2e-32111177111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179652.13e-89LOB domain-containing protein 24-like
SwissprotP594673e-40LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594683e-40LBD24_ARATH; LOB domain-containing protein 24
TrEMBLT1NTM51e-122T1NTM5_TRIUA; Uncharacterized protein
STRINGTRIUR3_34186-P11e-123(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-35LOB domain-containing protein 24