PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_34193-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 259aa MW: 27070.7 Da PI: 6.4173

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_34193-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.7	6.3e-41	61	160	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael TRIUR3_34193-P1 61 PCAACKLLRRRCAHECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAEL 154 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e TRIUR3_34193-P1 155 QAVRAE 160 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.359	60	161	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-41	61	158	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSTERERLDE IGKKIKREPD PAAAAAIAGV VVAVSPTEHH VPRRLGLVGP GIGGAPNIAT 60 PCAACKLLRR RCAHECPFAP YFSPHEPHKF AAVHKVFGAS NVSKMLLEVP EAERADAASS 120 LVYEANLRLR DPVYGCMGAI SMLQQQVNAL EAELQAVRAE IFKHRYRQAG VGVGAAHLIV 180 DDDDSAAAAG GFQAPATSLA HTADVGAVAE AGPEVATMPS TATATAYAAG QPSSTDYSSL 240 DTKLDIAAVD TLGEKKIVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	56	164	6	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	56	164	6	114	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY795561	0.0	AY795561.1 Triticum aestivum LOB1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158005.1	1e-147	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-68	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M7ZH69	0.0	M7ZH69_TRIUA; Uncharacterized protein
STRING	TRIUR3_34193-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-67	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]