PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34250-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 402aa    MW: 44583.7 Da    PI: 9.3315
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34250-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.81.2e-311021932102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ d++++ l++w + +nsf+v+d   f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll 
  TRIUR3_34250-P1 102 FVAKTYQMVCDPRTDALVRWGKGNNSFLVTDVAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLP 186
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k+
  TRIUR3_34250-P1 187 RIVRRKK 193
                      ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577564.71E-92161IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.3E-73456IPR001878Zinc finger, CCHC-type
SMARTSM003434.6E-53854IPR001878Zinc finger, CCHC-type
PfamPF000982.8E-73854IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015811.2193954IPR001878Zinc finger, CCHC-type
SMARTSM004153.3E-4998191IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3498191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3199191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-27102191IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-16102125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-16140152IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340141165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-16153165IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVRRYPKNKN KGKNKSVFNK RTKTTTFKKK KFNKAELECY ACGKPGHFSK ECPERADRRG  60
KTSSKTVNMV TASNTDGMDG LHTELALGLI GCGHGDLQTA PFVAKTYQMV CDPRTDALVR  120
WGKGNNSFLV TDVAGFSQLL LPCFFKHGNF SSFVRQLNTY GFRKVHPDRW EFAHESFLRG  180
QTHLLPRIVR RKKRGEAGAG ASCSSAVGGG EQHQHVVANM GDQVEEEEDE EGREALLEEV  240
QRLRQEQTAI GEQLAKMSRR LQATERRPDR LMSFLSKLAE DPNATSLHLL EQAAEKKRQR  300
MQCPSRDFTS FPVALPLHPA PSPPPPPLLA LGDPTMGGVR VWQWAEPMPL ALTTFEQPSA  360
SSGVQQVPEF EGGRSGSSMG ITDGGTAVET PFPFCLLGQC FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-2110219120120Heat shock factor protein 1
5d5u_B8e-2110219129129Heat shock factor protein 1
5d5v_B8e-2110219129129Heat shock factor protein 1
5d5v_D8e-2110219129129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085530.0KF208553.1 Triticum aestivum heat shock factor C1e (HsfC1e) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162679.10.0heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-124HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLM8AAU00.0M8AAU0_TRIUA; Heat stress transcription factor C-1a
STRINGTRIUR3_34250-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-53heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]