PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34325-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 199aa    MW: 21961.8 Da    PI: 6.1367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34325-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11104144132
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC........... CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.........k 32 
                      +rr+h ++Er+RR+++N+ ++ Lr+l+P+++         +
  TRIUR3_34325-P1 104 QRRTHIAVERNRRRQMNEYLAALRSLMPQSYaqrlripplH 144
                      79***************************844555555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.51E-9102137No hitNo description
Gene3DG3DSA:4.10.280.102.9E-9102136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.89E-9102133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.093103184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9104162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MALEAVVFAQ GHFGYGQAPG LGPWCDMVGA GGFLEDCWDQ QLLAAPVAPN AEDQWEPVSS  60
WDQSEASSEG KAAAPEPAMA AAATGRRKRR RTKIVKNKEE VESQRRTHIA VERNRRRQMN  120
EYLAALRSLM PQSYAQRLRI PPLHLNVTTV DAMVLYSFSL KVEDGSKLSS VEDIAAAVHE  180
ILARIQREEE EAGRLSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18690RKRRR
28691RKRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153287.17e-77transcription factor bHLH96-like
SwissprotQ9C7T47e-19BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A446RGK51e-144A0A446RGK5_TRITD; Uncharacterized protein
TrEMBLM8B3H01e-144M8B3H0_TRIUA; Transcription factor bHLH96
STRINGTRIUR3_34325-P11e-145(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-19bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]