PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_34351-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 267aa MW: 29197.4 Da PI: 9.4791

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_34351-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	33	111	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ TRIUR3_34351-P1 33 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 111 6****************************98725689***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.4E-34	28	96	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.222	31	109	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-37	32	112	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.4E-31	34	108	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MASFAATQLG LNLGYRTYFP PRGGYTYGHH PPRCQAEGCK ADLSGAKRYH RRHKVCEHHS 60 KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD AKKSCRKRLA DHNRRRRKSK PSDGDAADKR 120 RAQASKAGSA KGKAAGSSSK STGTGDAMDI QVQLGSGDLS KDQDETMGHG EVVKEMQVDP 180 KGKASMMQQQ QQQQGHHGHG LHLQSQHGFP FPSSSAGSCF PQSQAVSSTD NTSNIGHVQQ 240 EQPALGFHQH SNILQLGQAM FDLDFDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	34	108	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	120	RRRRKSKPSDGDAADKRR
2	104	109	RRRKSK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
UniProt	Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000269\|PubMed:17594063}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF447883	0.0	KF447883.1 Triticum aestivum squamosa promoter-binding-like protein 8 (SPL8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192131.1	1e-170	squamosa promoter-binding-like protein 8
Swissprot	Q01KM7	1e-133	SPL8_ORYSI; Squamosa promoter-binding-like protein 8
Swissprot	Q7XPY1	1e-133	SPL8_ORYSJ; Squamosa promoter-binding-like protein 8
TrEMBL	M7YMY2	0.0	M7YMY2_TRIUA; Squamosa promoter-binding-like protein 8
STRING	TRIUR3_34351-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6990	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-43	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]