PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34435-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 325aa    MW: 36462.1 Da    PI: 6.5795
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34435-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.8e-081175657
                     S--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC............TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  6 tftkeqleeLeelFek.nrypsaeereeLAkkl............gLterqVkvWFqNrRakekk 57
                     +ft+ ++  +ee+ +  n  p++  ++ L+++              ++ +qV +WFqNrR+ +k+
  TRIUR3_34435-P1 11 RFTHREVAKMEEVLRDlNAMPQRPVIQALTDEFntsshrsgngkvPVQYKQVHTWFQNRRYTQKR 75
                     699999999*****999*************************99999***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.977376IPR001356Homeobox domain
SMARTSM003898.5E-5580IPR001356Homeobox domain
CDDcd000864.84E-5676No hitNo description
Gene3DG3DSA:1.10.10.609.3E-71078IPR009057Homeodomain-like
SuperFamilySSF466892.61E-91077IPR009057Homeodomain-like
PfamPF000466.2E-61175IPR001356Homeobox domain
PfamPF167191.2E-33119245IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTGLPPRLVF RFTHREVAKM EEVLRDLNAM PQRPVIQALT DEFNTSSHRS GNGKVPVQYK  60
QVHTWFQNRR YTQKRRGERP PARGKMLPTG AEAQHPASYW VQSSCPSNAG NTSSDGGLVQ  120
LEAKSPRNGA WYDVAAIQSC RLSETGDQEV QIWFSGFGAE EEEWINVCKS VRLRSLPCID  180
TECVGVLPGD LILCYQEGKE QALYFDAHVL EVERRTHDIR GCRCSFLVRY DHDHSEEIVP  240
LRKVCRRPSS DVKIDIVIDH SLAEKKAQKP HKRMDMNPEE VTVVPSPPYQ GGPSDNLAAS  300
LLVMPDGTHN DSVADVQMGD TEAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-381192484133SHH1 SAWADEE
4iur_B4e-381192484133SHH1 SAWADEE
4iut_A4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-381192484133SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157952.11e-131protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_020157953.11e-131protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ72e-81SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM7Z6F00.0M7Z6F0_TRIUA; Uncharacterized protein
STRINGTRIUR3_34435-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.17e-84sequence-specific DNA binding transcription factors;sequence-specific DNA binding