PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34498-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 121aa    MW: 13052.5 Da    PI: 9.7424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34498-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-062547123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C++sF+++  L  H++ H
  TRIUR3_34498-P1 25 FACSYCSRSFKNSQALGGHQNAH 47
                     78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.76E-62350No hitNo description
PfamPF139125.0E-62447IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7832552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MEMEEGLDLS LSLRQYTPPW SQLVFACSYC SRSFKNSQAL GGHQNAHKLA RRATALSSAA  60
AGELAIENHH SAPPRPGARA WRAGYRQQAR RTGTGSGATS SGARRGDQEL AEEAIDLSLK  120
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178987.12e-43zinc finger protein 2-like
TrEMBLA0A3B6KUA93e-82A0A3B6KUA9_WHEAT; Uncharacterized protein
TrEMBLA0A446TQV13e-82A0A446TQV1_TRITD; Uncharacterized protein
TrEMBLM7YQ393e-82M7YQ39_TRIUA; Zinc finger protein 4
STRINGTRIUR3_34498-P14e-83(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.18e-10zinc finger protein 4