PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_34541-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1215aa MW: 132989 Da PI: 7.3193

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_34541-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.8	1.5e-07	11	67	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++lF+ + ++ ++e +e+++ +gLt +qV+ +F +R++ +k TRIUR3_34541-P1 11 KKPRDLLNPKAVNSMQSLFAVKDTLGKRETREISALCGLTVTQVREFFASQRTRVRK 67 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.815	8	68	IPR001356	Homeobox domain
SMART	SM00389	4.7E-5	10	72	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-5	11	67	IPR001356	Homeobox domain
CDD	cd00086	1.22E-4	11	67	No hit	No description
SuperFamily	SSF46689	6.42E-7	11	71	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-6	11	75	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1215 aa Download sequence Send to blast
AAGALSIKIG KKPRDLLNPK AVNSMQSLFA VKDTLGKRET REISALCGLT VTQVREFFAS 60 QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTALKLEAS KTATNVCSLN SEQTPLDIET 120 HAQVIEPLST LEPLEMFQSS SQLVEVPQSS LQQPEVQQCT ATPIPITPTG TIQPTDAKIN 180 QDSVQKETKQ EEVAPGVESE DKKFLDSIFA LMRKEETFSG QVKLMEWILQ INNATILSWF 240 LTMGGLTIVS TWLSQAATEE QTTVILVIFK VLLHLPLHKA LPAHMSVVLQ TINRLRFYRT 300 QDISGRARNL LSRLSKVLVR SQASKKPQKD LICKQRISEI LHDESWKSEV DITEEILALT 360 EGASESRKPE PKKTPLLLTA SADESYKKSP VQTKSKERRK VQLVEHPNRK AAGKNAHSAR 420 TICTNNSRPL SADDIQKAKM RAMFMQEKYG KVDTSKVSDK PETTENKKPS GLVNSNEPPM 480 PRSPLTSTAK QPVDPSPSTS IQNAVPLSDN PEILATPKLN IALRETPIEK LDSKRVHWQI 540 PPEVWIDPSW SVSAGENSKE LDVQAQRNRR EKETFYASPK DIPSNPKDPW DSEMDFDDSL 600 TPEIPIEQPP DADTMEVDSV GAAPPNMVVP GEIQQVGSTS SSSLTVASGA NGAASEPDLE 660 LLAVLLKNPQ LVFALSSNEV GNLPTEQTVA LLDMLKQTGL GLSELVNSLP NGAGVPNKPE 720 PVPETIPTSL PSPTPPKDLP ASVGWRSDFP THARAPNLQQ AQLPNNGNTP FASEVHQSFS 780 NVVSPLPSQP YTSVSALPAH IQSNSPSLQS QSAISVNSLT QYAAPVNNML DRTLVHQHTQ 840 PYGLASDHAA VAIHQQPAVN KPAHEFQNMS NSGLARSLTP EPNAAYATFP WQSGAATVAS 900 TGRSTTPDQW ADRVTNSYND ASAPYLNQSA YSNQSSYDAY GSSTSASSQG LNRNGYTQTT 960 SEYQMSGRNV RQRHLLSPEP GSARVYGGMQ GYIPEVSKLG NYGQQSYNPP VASRDWSSGQ 1020 QSYTPAEPSR DWNSGQQSYT PAEPSSDWSS VQQSYTSAEL SRDRRSGQQG YTPAEPSRQW 1080 SSGQQSYTPA EPSRQWSSGQ QGYTPAEPSN QWSSGQQGYT QAGPSNHRSS GQQGYTPAEP 1140 SRQWSSAQQG YTPSDPSVQQ GYTPAEPSRP WSTASQGAQN PDTSRQWSGA GKQDYYNTPS 1200 DGRSPYDQRR RRRWE

Sequence ? help Back to Top

Protein Sequence Length: 1215 aa Download sequence Send to blast

AAGALSIKIG KKPRDLLNPK AVNSMQSLFA VKDTLGKRET REISALCGLT VTQVREFFAS  60
QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTALKLEAS KTATNVCSLN SEQTPLDIET  120
HAQVIEPLST LEPLEMFQSS SQLVEVPQSS LQQPEVQQCT ATPIPITPTG TIQPTDAKIN  180
QDSVQKETKQ EEVAPGVESE DKKFLDSIFA LMRKEETFSG QVKLMEWILQ INNATILSWF  240
LTMGGLTIVS TWLSQAATEE QTTVILVIFK VLLHLPLHKA LPAHMSVVLQ TINRLRFYRT  300
QDISGRARNL LSRLSKVLVR SQASKKPQKD LICKQRISEI LHDESWKSEV DITEEILALT  360
EGASESRKPE PKKTPLLLTA SADESYKKSP VQTKSKERRK VQLVEHPNRK AAGKNAHSAR  420
TICTNNSRPL SADDIQKAKM RAMFMQEKYG KVDTSKVSDK PETTENKKPS GLVNSNEPPM  480
PRSPLTSTAK QPVDPSPSTS IQNAVPLSDN PEILATPKLN IALRETPIEK LDSKRVHWQI  540
PPEVWIDPSW SVSAGENSKE LDVQAQRNRR EKETFYASPK DIPSNPKDPW DSEMDFDDSL  600
TPEIPIEQPP DADTMEVDSV GAAPPNMVVP GEIQQVGSTS SSSLTVASGA NGAASEPDLE  660
LLAVLLKNPQ LVFALSSNEV GNLPTEQTVA LLDMLKQTGL GLSELVNSLP NGAGVPNKPE  720
PVPETIPTSL PSPTPPKDLP ASVGWRSDFP THARAPNLQQ AQLPNNGNTP FASEVHQSFS  780
NVVSPLPSQP YTSVSALPAH IQSNSPSLQS QSAISVNSLT QYAAPVNNML DRTLVHQHTQ  840
PYGLASDHAA VAIHQQPAVN KPAHEFQNMS NSGLARSLTP EPNAAYATFP WQSGAATVAS  900
TGRSTTPDQW ADRVTNSYND ASAPYLNQSA YSNQSSYDAY GSSTSASSQG LNRNGYTQTT  960
SEYQMSGRNV RQRHLLSPEP GSARVYGGMQ GYIPEVSKLG NYGQQSYNPP VASRDWSSGQ  1020
QSYTPAEPSR DWNSGQQSYT PAEPSSDWSS VQQSYTSAEL SRDRRSGQQG YTPAEPSRQW  1080
SSGQQSYTPA EPSRQWSSGQ QGYTPAEPSN QWSSGQQGYT QAGPSNHRSS GQQGYTPAEP  1140
SRQWSSAQQG YTPSDPSVQQ GYTPAEPSRP WSTASQGAQN PDTSRQWSGA GKQDYYNTPS  1200
DGRSPYDQRR RRRWE

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360732	0.0	AK360732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1124E18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179217.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-120	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	T1NUL8	0.0	T1NUL8_TRIUA; Uncharacterized protein
STRING	TRIUR3_34541-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-103	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]