PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_34542-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 454aa MW: 49692.5 Da PI: 4.5492

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_34542-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.6e-06	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H TRIUR3_34542-P1 70 YVCEICGKGFQRDQNLQLHRRGH 92 9********************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.48E-5	67	119	No hit	No description
SMART	SM00355	0.0069	70	92	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.8E-6	70	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.801	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	40	112	142	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MGEVRQQQQL ALAADENMSN LTSASGDQTS VSSHPLPPPS KKKRSLPGNP DPDAEVIALS 60 PRALMATNRY VCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ RNPNEVVRKK VYVCPEPGCV 120 HHDRSRALGD LTGIKKHFSR KHGEKKWKCD KRDSFITHRA FCDALAEESA RAVAVAVEEQ 180 QHPGMLYSHG GGGAGFQMPA VMDPSSSLGG GHGLIQELCL KREREQQQQQ QQFAQPWLSE 240 QQQLEMAGEG AQAMFGTARM EQEFNASSTP DSRTGLRSLH AHVGLGEGGL GGAEGKGLGE 300 LASELHGCNG SDGGGSEEKS GEEWRGCATV DDLTDMLDFD SEDIDGEPWP DYGQQDWDAD 360 DEEIRRPPTT HLIATVDDST DMLDFDPEDI DGMDDDAGGE EEPPPTGRWT STSSYDSGKL 420 NAVHKGEDTP SEDEDEPLKQ DTGEQKNFPP EVKT

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MGEVRQQQQL ALAADENMSN LTSASGDQTS VSSHPLPPPS KKKRSLPGNP DPDAEVIALS  60
PRALMATNRY VCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ RNPNEVVRKK VYVCPEPGCV  120
HHDRSRALGD LTGIKKHFSR KHGEKKWKCD KRDSFITHRA FCDALAEESA RAVAVAVEEQ  180
QHPGMLYSHG GGGAGFQMPA VMDPSSSLGG GHGLIQELCL KREREQQQQQ QQFAQPWLSE  240
QQQLEMAGEG AQAMFGTARM EQEFNASSTP DSRTGLRSLH AHVGLGEGGL GGAEGKGLGE  300
LASELHGCNG SDGGGSEEKS GEEWRGCATV DDLTDMLDFD SEDIDGEPWP DYGQQDWDAD  360
DEEIRRPPTT HLIATVDDST DMLDFDPEDI DGMDDDAGGE EEPPPTGRWT STSSYDSGKL  420
NAVHKGEDTP SEDEDEPLKQ DTGEQKNFPP EVKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	109	KLKQRNPNEVVRKK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250971	0.0	AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164353.1	1e-169	protein indeterminate-domain 7-like
TrEMBL	T1NUL9	0.0	T1NUL9_TRIUA; Uncharacterized protein
STRING	TRIUR3_34542-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	3e-67	indeterminate(ID)-domain 7