PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34584-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29463.2 Da    PI: 9.7364
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34584-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  TRIUR3_34584-P1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                     79***********************************************95 PP
2K-box94.61.6e-31971934100
            K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      s++   ++e +a+++qqe++kL+++i++Lq+++R l+ +++++++l++L+qLe +Lek++ kiR++Knel+++++e++qk+e elq++n +Lr+
  TRIUR3_34584-P1  97 SNS-GtVAEVNAQYYQQESSKLRQQISSLQNSNRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKREMELQNDNIYLRS 189
                      233.25999************************************************************************************* PP

            K-box  97 klee 100
                      k+ e
  TRIUR3_34584-P1 190 KVSE 193
                      *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.88161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-42160IPR002100Transcription factor, MADS-box
CDDcd002656.27E-40295No hitNo description
SuperFamilySSF554551.57E-30275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-32323IPR002100Transcription factor, MADS-box
PfamPF003199.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-323859IPR002100Transcription factor, MADS-box
PfamPF014867.6E-24106191IPR002487Transcription factor, K-box
PROSITE profilePS5129714.145107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGRIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
SFLSKLEQVC SWLSWGKESG SVKATIERYK KANSDTSNSG TVAEVNAQYY QQESSKLRQQ  120
ISSLQNSNRS LVRDSVSTMT LRDLKQLEGR LEKGIAKIRA RKNELMYAEV EYMQKREMEL  180
QNDNIYLRSK VSENERGQQP VNMMASGSAS SEYDHMVSLY DSRNFLQANI MQQQQQHYSQ  240
QLQPTALQLG QQYFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19160160Myocyte-specific enhancer factor 2B
1tqe_Q2e-19160160Myocyte-specific enhancer factor 2B
1tqe_R2e-19160160Myocyte-specific enhancer factor 2B
1tqe_S2e-19160160Myocyte-specific enhancer factor 2B
5f28_A3e-19158158MEF2C
5f28_B3e-19158158MEF2C
5f28_C3e-19158158MEF2C
5f28_D3e-19158158MEF2C
6c9l_A2e-19160160Myocyte-specific enhancer factor 2B
6c9l_B2e-19160160Myocyte-specific enhancer factor 2B
6c9l_C2e-19160160Myocyte-specific enhancer factor 2B
6c9l_D2e-19160160Myocyte-specific enhancer factor 2B
6c9l_E2e-19160160Myocyte-specific enhancer factor 2B
6c9l_F2e-19160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1887750.0KT188775.1 Triticum urartu WAG-2b MADS box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153239.11e-145MADS-box transcription factor 3-like isoform X2
SwissprotQ407041e-138MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLM7ZCL90.0M7ZCL9_TRIUA; MADS-box transcription factor 3
STRINGTRIUR3_34584-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]