PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34646-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 186aa    MW: 19495 Da    PI: 10.7318
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34646-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.7e-094788445
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45
                       +++k+q  +Lee+F+ ++ ++ ++ + LA++lgL  rqV 
  TRIUR3_34646-P1 47 NLRMSKDQSAVLEECFKTHSALNPKQNTALANRLGLRPRQVE 88
                     56789************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-72588IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-103089IPR009057Homeodomain-like
CDDcd000863.55E-54589No hitNo description
PfamPF000464.0E-64888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSPSTSPKSG ISAGTKRGLE HTSSGVFPAA SSDEDDGGGD GAGGRKNLRM SKDQSAVLEE  60
CFKTHSALNP KQNTALANRL GLRPRQVENK RLEKEVAELR VLKAAPQAHN GASEGPLTTL  120
TMSLSRKRVA STSSASAGTV PSFSANAGTG MPMPSLKEWQ FFCAFRDTGA MYGGSSRLAK  180
VVKPAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652388e-61AK365238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170043.13e-77homeobox-leucine zipper protein HOX2-like
SwissprotA2Y9313e-24HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE53e-24HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLM8A5B71e-132M8A5B7_TRIUA; Homeobox-leucine zipper protein HOX28
STRINGTRIUR3_34646-P11e-133(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.14e-21homeobox protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]