PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34876-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 273aa    MW: 29126.2 Da    PI: 5.5869
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34876-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox474.4e-152787257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     r+R+++++eq+ +Le+ F++   +p ++e +++   l     + +++V++WFqNrR + ++
  TRIUR3_34876-P1 27 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRLLLerfgAVRDANVFYWFQNRRSRSRR 87
                     89*****************99*************************************997 PP
2Wus_type_Homeobox104.28.4e-342688264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+  Le++G+++d+NVfyWFQNr++R+r++
    TRIUR3_34876-P1 26 TRSRWAPKPEQILILESIFNSGMVNPAKDETARIRLLLERFGAVRDANVFYWFQNRRSRSRRR 88
                       689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-132093IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-82292IPR009057Homeodomain-like
PROSITE profilePS5007111.2242388IPR001356Homeobox domain
SMARTSM003896.3E-52592IPR001356Homeobox domain
PfamPF000467.9E-132787IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDQHHHGQAP AHGGGRSSEG GEPTTTRSRW APKPEQILIL ESIFNSGMVN PAKDETARIR  60
LLLERFGAVR DANVFYWFQN RRSRSRRRAR QLQQSCGGTG DADQLPSNAA AGHGYHAIGS  120
SPYNTMQYGQ LGGGVSAAAA AVNTAPRFLV DDADGGDDLF AIPRQMGLMA RGGENQYGYT  180
ATDASQLSYQ ATGTTMPVFI NGTVYEVPST GALDVAGTFG PDVILVHSSG EILPVNERGV  240
LMKSLQMGEC YYLEQGGRSD GPWGAPGEEE SSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651740.0AK365174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2031K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200216.11e-155WUSCHEL-related homeobox 10-like
SwissprotA2YST11e-88WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBLM7ZJ110.0M7ZJ11_TRIUA; WUSCHEL-related homeobox 10
STRINGTRIUR3_34876-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-42WUSCHEL related homeobox 11