PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34907-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 693aa    MW: 79576.4 Da    PI: 6.5604
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34907-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.77e-1293174291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +Y+++A   GF   +  +  +      +k +  C+++ k +++++  +++r+  ++++ +C+a+ +vk   +g+we t++++eHnH+l+p
  TRIUR3_34907-P1  93 YYSAHALLSGFVAIRGPNFMR------KKFHVECNRSRKLAPSQDL-KRKREVYSVNKAQCEARAVVKPV-KGQWEFTSVRSEHNHPLCP 174
                      8999*******9999988777......456799*********9988.99999****************99.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1093174IPR004330FAR1 DNA binding domain
PfamPF105517.5E-28295388IPR018289MULE transposase domain
PROSITE profilePS509669.025579615IPR007527Zinc finger, SWIM-type
PfamPF044347.5E-4586607IPR007527Zinc finger, SWIM-type
SMARTSM005750.0074590617IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
SSGALSDELE IHANSADLSL QLAEEQSQLH DILAISEMPI NDTGSGSDSD GSSGNETDKE  60
PGKYYYPGFE ELVNPRPPEV GMRFPTLEDA TRYYSAHALL SGFVAIRGPN FMRKKFHVEC  120
NRSRKLAPSQ DLKRKREVYS VNKAQCEARA VVKPVKGQWE FTSVRSEHNH PLCPSPSLTK  180
FFLSCKHMSA EEKSFLRALQ QSSIHPKKAM KIFKRMRGIL GSLPFNTKDA NTSQCAEQQG  240
KPNSDVETTV KHLKELELQN PCVSITMQTD EDSIVRSLFW TDARSRLDYE IFGDVLSFDT  300
TYSTISHNML FTSISGMNEH GRTLVFGYAL LQDRKAETFK WMFQTFLHVM VGKMPRAIIT  360
DQDEAIAKAI SEVMPQVKLR FCKFHVMRKA REKLGGFIAA RGDINSELHA LVNNSLTETE  420
FEEGWAALIE RYSASGNEYL QLLWETRKER WVPVYFKEDF YPFVEMTGCC EGSNLLFRDY  480
VLPKDRIEKF LERYEDVQER IMETDDEDRL QSRTEPSCFS MQPIEKHAAR IYTRQIFLKV  540
QRELLHSTAF NVQEIQTGTV YRLEKVSAYE NPEFDRNSFE LLVEPSTNAI KCECAKFTRD  600
GIPCCHIFRL FTQFGVNEIP GQYIVPRWTA KFKEEQMKQY REKCLDSRGT DQSENTMRYG  660
MLLSKVADIG KEICGDGSKC DKFRLELEAI QGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-37HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165335.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1NVL80.0T1NVL8_TRIUA; Uncharacterized protein
STRINGTRIUR3_34907-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-77FAR1-related sequence 5