PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34950-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 145aa    MW: 16025 Da    PI: 9.8754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34950-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-1848100254
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+
  TRIUR3_34950-P1  48 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAR 100
                      788899**********************************************9 PP
2HD-ZIP_I/II87.91.3e-2848104157
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktk 57 
                      +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRAR  +k
  TRIUR3_34950-P1  48 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARSWNK 104
                      69***************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-184098IPR009057Homeodomain-like
SuperFamilySSF466892.48E-1843103IPR009057Homeodomain-like
PROSITE profilePS5007116.77944104IPR001356Homeobox domain
SMARTSM003892.1E-1646108IPR001356Homeobox domain
CDDcd000861.24E-1648104No hitNo description
PfamPF000461.9E-1548100IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTGTASGGVS SMSVGGAVKR ERAEEAELGE MVSSTAVGAE EDDDGSTRKK LRLTKEQSAL  60
LEDRFKEHST LNPKQKVALA KQLNLRPRQV EVWFQNRRAR SWNKIACSTV GSSFLLDNMD  120
NIWDVQNSRS MGKIPDRHQG SGSQM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-77FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173855.12e-63homeobox-leucine zipper protein HOX19-like
SwissprotA2XE761e-43HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-43HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLM8AR801e-102M8AR80_TRIUA; Homeobox-leucine zipper protein HOX19
STRINGTRIUR3_34950-P11e-103(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-32homeobox from Arabidopsis thaliana