PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35186-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 478aa    MW: 53207.9 Da    PI: 4.9545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35186-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13289336355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h   ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  TRIUR3_35186-P1 289 KTHVLSERRRREKLNEMFLVLKSLVPSiN------KMDKASILAETITYLKELE 336
                      58999**********************77......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.431286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-14289340No hitNo description
SuperFamilySSF474596.8E-18289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18290344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-16292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MALSAAPAGQ APPPGKQLSY QLAAASSNVE GRVLQRRGKD EEDHKLEQLR ELYESLLSGK  60
ADHRARRPAA SLSPEDLGEA EWYTYSFRPG QGISMDDSIN GGGGVRLEYD GTPGRTSFWE  120
LPFQACLESE APSSSPSTNE TRNREVEIVV FEDLDHNVAK GFISELGEVE SMSDANINCI  180
TTEEVDEFYG LIEELDVCAL EDNWVMERSF EFMSSLEMAP DMDAPRIDDN TITLSSSVNG  240
SRPSCFTIWK RSSDWEGMDV RDPGESQKLL KKVVAGGGWT MRAQESNIKT HVLSERRRRE  300
KLNEMFLVLK SLVPSINKMD KASILAETIT YLKELEQRVE ELESSRPPSW HPKEAAGRGL  360
HDVAGRKKIK QSTGCKRKAP ESEREDDDGP SNVVNVTMMD KEVILEVQCR WKKLLMKRVF  420
DAIKSLHLDI VSVHTSTPGG LLDLKIRATH QVAASSATVA PGMITEALQK AISNHWQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299ERRRRE
2295300RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163619.10.0anthocyanin regulatory R-S protein-like isoform X2
SwissprotP135264e-94ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLM8B3830.0M8B383_TRIUA; Anthocyanin regulatory Lc protein
STRINGTRIUR3_35186-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.35e-33bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]