PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35231-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 389aa    MW: 41887 Da    PI: 7.9909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35231-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-116085227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C +++rtG C +GdrC+++H++
  TRIUR3_35231-P1 60 DQADCIYYLRTGACGFGDRCRYNHPR 85
                     6789********************96 PP
2zf-CCCH406.4e-13110134327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C ++++tGtCk+G++Ck++H++
  TRIUR3_35231-P1 110 QPVCEYYMKTGTCKFGSNCKYHHPK 134
                      789********************96 PP
3zf-CCCH40.25.7e-13154179227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G++CkF+H++
  TRIUR3_35231-P1 154 GEKECSYYMKTGQCKFGSTCKFHHPE 179
                      7899********************96 PP
4zf-CCCH38.81.6e-12307333127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++++rtG Ck+G++Ck++H++
  TRIUR3_35231-P1 307 PGQPECQYYMRTGDCKFGATCKYHHPR 333
                      5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6055886IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-55885IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-96085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-66186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-46485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042107135IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7109136IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6112136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812152180IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6152179IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10154179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6155179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4158178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319306334IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6306333IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10308333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5310334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4312333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEPHPAAAAG GGGGGGGAGE GEAGRGADPD TGLEGSMWRM GLAGDGGGEG DGARLPERPD  60
QADCIYYLRT GACGFGDRCR YNHPRDRGGT EFGGGAKNAV ALDYPERLGQ PVCEYYMKTG  120
TCKFGSNCKY HHPKQDGSVQ PVMLNSNGFP LRPGEKECSY YMKTGQCKFG STCKFHHPEF  180
GGVPVTPGIY PPLQSSTVPS PHPYAPLTNW QMGRPPVVPG SYMPGSYTPM MLSSGMIPLQ  240
GWSPYPASVN PVASGGVQQT VQAGPMYGIG HHGSSSTIAY GGPYMPYSSS TIQSSNNQQE  300
HGFPERPGQP ECQYYMRTGD CKFGATCKYH HPRDWSSPKS NYMFSPFCLP LRPNLKEIND  360
LLVQSKYVRE ALHVPWLSMR HSKSHATAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716260.0AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.10.0zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A446NCT80.0A0A446NCT8_TRITD; Uncharacterized protein
TrEMBLM8A1150.0M8A115_TRIUA; Zinc finger CCCH domain-containing protein 6
STRINGTRIUR3_35231-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-102C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]