PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_35437-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 607aa    MW: 70587 Da    PI: 7.5217
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_35437-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.17.1e-2411100190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +f+  Y+ ++GF+vr+++++ksk +g it++++vCs+eg+r+++k++ ++++r+raetrtgC+ ++ ++ ++  +++ev+kl+ eHnH l+
  TRIUR3_35437-P1  11 NFWTCYGGHTGFDVRVNYENKSKLDGVITSARYVCSNEGYRRKDKRD-NNTKRPRAETRTGCNVRMGITIDReAENYEVHKLVVEHNHVLQ 100
                      69******************************************999.9********************99989**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-181199IPR004330FAR1 DNA binding domain
PfamPF105515.3E-23222316IPR018289MULE transposase domain
PROSITE profilePS509669.174449485IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-4455482IPR007527Zinc finger, SWIM-type
SMARTSM005759.4E-4460487IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MKFNSTKVAW NFWTCYGGHT GFDVRVNYEN KSKLDGVITS ARYVCSNEGY RRKDKRDNNT  60
KRPRAETRTG CNVRMGITID REAENYEVHK LVVEHNHVLQ LPGTSHLMPS QRKISALQAI  120
EIETADDSGI VPKRAHELAG RQVGGPLNLG YTCRDRKNHL RTRRQRDLMY GEAGSMLKYF  180
RDKKNENPAF EYDMQLDCNE QIANIFWADA KMIIDYAHFG DVVTFDTPFG TNKEYRPFGV  240
FVGFNHFREM VIFGAALLYD ETFESFKWLF NTFLSLHNKK QPRAIFTDQD VAMGNAVQAV  300
FTEAWHGLCT FHIMQNAIRH LPYKKKDEEG PNVLADFSAC MYKYEEEEAF VEAFNAIRSN  360
VDTQTWAVQE KRDNEVNEEY ESRKKLPRVR MRTPMVIQAS KVYTPRIFED FQNEYERSIS  420
AYIKPSIEHN AYIVAIASLD PEFTYEEECK VVVDYEEQKV FCDCGQFERV GILCSHALKA  480
LDVMNIKYLP GHYILKRWTR EARSGTIQNS HGNIVLEDPR SEDRQQLKFF MHEFLGIASQ  540
AVTSEECIKL VDDALKNLRK QVEEKARTTT CRTEDISKEP DDCLKDACLK KKEIPKKNSR  600
RKKSWLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877975.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1NX160.0T1NX16_TRIUA; Uncharacterized protein
STRINGTRIUR3_35437-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-68FAR1-related sequence 5