PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000062t3
Common NameTCM_000062
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WOX
Protein Properties Length: 228aa    MW: 25963.9 Da    PI: 5.9619
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000062t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-2198158257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       r+R+t+t+ ql++Le+ F + + +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Thecc1EG000062t3  98 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 158
                       89*****************99**************************************97 PP
2Wus_type_Homeobox103.81.2e-3397160265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
   Thecc1EG000062t3  97 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 160
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1793162IPR009057Homeodomain-like
PROSITE profilePS5007114.80394159IPR001356Homeobox domain
SMARTSM003898.6E-1596163IPR001356Homeobox domain
SuperFamilySSF466892.91E-1897160IPR009057Homeodomain-like
CDDcd000861.63E-1298160No hitNo description
PfamPF000463.1E-1998158IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMEWENQEQQ QQHHQENQNQ RESVNVNVNN GGVMYVKVMT DEQLETLRKQ IAVYASICEQ  60
LVEMHKNLTA QQDLAGGRLG NLYCDPLMTS AGHKITARQR WTPTPVQLQI LERIFDQGTG  120
TPSKQKIKEI TSELSQHGQI SETNVYNWFQ NRRARSKRKQ LVSSSNNAES EVETEVESPN  180
EKKTKPENLL SQQNPAPRAE DLCFQNPEIT SELHFLGVLS NPNTYNG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981468.11e-169PREDICTED: WUSCHEL-related homeobox 13
SwissprotO817881e-103WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A061DF301e-168A0A061DF30_THECC; WUSCHEL related homeobox 13 isoform 1
TrEMBLA0A061DG991e-168A0A061DG99_THECC; WUSCHEL related homeobox 13 isoform 3
STRINGEOX906551e-167(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.18e-92WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]