PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000084t1

Common Name

TCM_000084

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SBP

Protein Properties

Length: 199aa MW: 22826.4 Da PI: 8.3433

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000084t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.7	7.7e-39	74	151	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C++dl +ak+yhrrhkvCe h+ka+ v v+g++qrfCqqCsrfhe+sefD +krsCr+rLa+hnerrrk q+ Thecc1EG000084t1 74 CCQADECDTDLRDAKQYHRRHKVCERHAKAAFVSVKGIRQRFCQQCSRFHEISEFDSTKRSCRDRLAGHNERRRKVQS 151 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-31	68	136	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.436	72	149	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-36	73	153	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.6E-31	75	148	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MAKGSFKTLG GIEDESGTEQ ESEAESEDEE KQEQGEERRV MIRVVPRERF ERRSLIQSHS 60 ASCRRGDGGG SLLCCQADEC DTDLRDAKQY HRRHKVCERH AKAAFVSVKG IRQRFCQQCS 120 RFHEISEFDS TKRSCRDRLA GHNERRRKVQ SDQQAEDVER SPASEMNTSM VKMQAARHPK 180 HGELTLQGCT DPKRFRIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-32	68	148	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046540.1	1e-142	PREDICTED: squamosa promoter-binding-like protein 3
TrEMBL	A0A061DFJ2	1e-141	A0A061DFJ2_THECC; Squamosa promoter-binding protein-like 12
STRING	EOX90697	1e-142	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22067	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-36	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	Thecc1EG000084t1
Entrez Gene	18610665

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]