PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000244t1
Common NameTCM_000244
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family DBB
Protein Properties Length: 186aa    MW: 20272.9 Da    PI: 6.4917
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000244t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07433534
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                       C+ +e+  ++ fC  ++  lC+ C ++ H
  Thecc1EG000244t1  4 LCDSCESAAAIVFCAADEAALCRACDEKVH 33
                      7**************************998 PP
2zf-B_box25.43e-085286236
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg 36
                      + + C+ +e+ ++ ++Ce +++ lC +C +  H g
  Thecc1EG000244t1 52 DVPLCDICENAPAFFYCEIDGSSLCLQCDMIVHVG 86
                      5689**************************99955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.381147IPR000315B-box-type zinc finger
CDDcd000211.54E-6345No hitNo description
PfamPF006438.6E-6342IPR000315B-box-type zinc finger
SMARTSM003361.3E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006434.1E-65385IPR000315B-box-type zinc finger
CDDcd000219.53E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDSCES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SDVPLCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HARYLLFRQR VEFPGDKPGN VEDPASQPVD  120
PGETRRGQNQ PAKPTVGESQ QNHKVSSVQL VDANADGHVK MDTKMIDLNM KPHRIHGQAS  180
NNQEQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046745.21e-136PREDICTED: B-box zinc finger protein 18
SwissprotC0SVM52e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A061DFT81e-135A0A061DFT8_THECC; B-box type zinc finger family protein
STRINGEOX909021e-136(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-78DBB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]