PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000367t1
Common NameTCM_000367
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 155aa    MW: 17375.8 Da    PI: 9.7739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000367t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-0786129344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       +WT+   +l+ +a +++  +   +W+ Ia+ +g g ++ ++k+ +
  Thecc1EG000367t1  86 SWTPKQNKLFEKALAKYDQDtpdRWHNIAKAVG-GTSAAEVKLQY 129
                       7******************9*************.********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.09782137IPR017884SANT domain
SMARTSM007172.2E-783135IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-1185140IPR009057Homeodomain-like
PfamPF002498.3E-686129IPR001005SANT/Myb domain
CDDcd001679.14E-787129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MISFPYRPLT SVIFGEKNSP SFPLHPFCKF QLTHPSFQIQ APTYFFNFQP VILQSLSLNP  60
LISFAVLRFS IMASNSLTSS RSSSSSWTPK QNKLFEKALA KYDQDTPDRW HNIAKAVGGT  120
SAAEVKLQYE ILVKDLKDIE SGRYPYPYPS GSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2477147171RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969929.11e-54PREDICTED: protein RADIALIS-like 3
TrEMBLA0A061DM731e-109A0A061DM73_THECC; RAD-like 6
STRINGEOX910731e-109(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-28RAD-like 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]