PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000435t1
Common NameTCM_000435
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 685aa    MW: 77476.5 Da    PI: 7.2349
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000435t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.62e-821614883346
              GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       e L+++A+++++++l+la+ +Larl+++ +sp+g+p+qR+a+yf eAL++  ++      ++ +++ +s+++ +++++a+k+fs + Pi+ f 
  Thecc1EG000435t1 161 EELIRAADCFDTHELQLAHVILARLNQRlRSPSGKPLQRAAFYFNEALQSLFTG------STRSTRLSSWSEIVQTIKAYKAFSGINPIPMFN 247
                       689************************99*************************......777888889999********************* PP

              GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       h+t+Nqa+lea++g+   +HiiDfdi+ G+Q+++L++++a+R+ ++   +RiT+v+++e   + e++ ++++L +fA+ l+++f++++++ ++
  Thecc1EG000435t1 248 HFTTNQALLEALDGSaPLIHIIDFDIGLGGQYASLMREMAERNdHSCKFIRITAVVPEE--YAIETRLIKDNLFQFAQDLKLRFQIEFVLLRT 338
                       ***************7889************************555669********66..99999*************************** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklp 276
                       +e+l+l+++++  gE++a+ l+ +++r l  s++++     +L+ +++++P vvv+v++e  ++ +++sF + f++ le+y+++f+sl+a + 
  Thecc1EG000435t1 339 FEMLSLKAFKFIDGEKTAILLSPSIFRCL--SLNVAA----FLSDLRRVNPSVVVFVDSEvwMESGTTSFRKNFVNGLEFYAMMFESLDAAV- 424
                       ****************************9..555555....*******************76677999**********************97. PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                       +  e+ +k+E  ll+++i  +v ++ ++      t + Wre +  aG+++v+ls++a  qa++ll kv++
  Thecc1EG000435t1 425 AGGEWVRKIETLLLRPRILAAVEAAARR------TTQPWRELFVGAGMRAVHLSQFADFQAECLLGKVQN 488
                       6668999***************998887......899*****************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.683133496IPR005202Transcription factor GRAS
PfamPF035146.9E-80161488IPR005202Transcription factor GRAS
PfamPF031346.7E-28529605IPR004345TB2/DP1/HVA22-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MRVPVTSPQN NHSPSPKTNN NSSSNNNSIA RNISFHGLNG VQTSCYEPTS VLDPRRSPSP  60
VPEKPVTNSV DVSNCISSDP HHHQAPSPEW GEYVLRNMDW DSIMKDLGLD DESVPPIKTI  120
NPQVISPCEN QIQSLPEFTS CELTHQSVHS DFNNLYDFYS EELIRAADCF DTHELQLAHV  180
ILARLNQRLR SPSGKPLQRA AFYFNEALQS LFTGSTRSTR LSSWSEIVQT IKAYKAFSGI  240
NPIPMFNHFT TNQALLEALD GSAPLIHIID FDIGLGGQYA SLMREMAERN DHSCKFIRIT  300
AVVPEEYAIE TRLIKDNLFQ FAQDLKLRFQ IEFVLLRTFE MLSLKAFKFI DGEKTAILLS  360
PSIFRCLSLN VAAFLSDLRR VNPSVVVFVD SEVWMESGTT SFRKNFVNGL EFYAMMFESL  420
DAAVAGGEWV RKIETLLLRP RILAAVEAAA RRTTQPWREL FVGAGMRAVH LSQFADFQAE  480
CLLGKVQNPA MAFLGSNVAS EVGLRLLLCP LGSNIVTRAA CCSVGIVLPV YSTFRAIERN  540
DENEQQKWLT YWAAYGSFTI VEVFSDKLLS WFPYYYHFKF AFLVWLQLPS TEGAKQIYKN  600
RLRPFLLRHQ AKVDQLMGFA CSEMARFIST HQEEFRFVRI MFRKMTGSAN AKVRGAAEPD  660
KPRRLPEIKG QTRMISNPES DHNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2119348336340GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301201.10.0scarecrow-like protein 15
SwissprotO232101e-145SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A061DHE60.0A0A061DHE6_THECC; GRAS family transcription factor, putative
STRINGEOX911560.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-147GRAS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]