PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000518t1

Common Name

TCM_000518

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 521aa MW: 59935.7 Da PI: 9.3286

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000518t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	4.9e-19	28	117	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 fk+ +d+ +++ l++p+kf++++g + s + l+ +sg +W v+l k++g ++l++GWkeF++ Lk g f+vFk++g+ +f v Thecc1EG000518t1 28 FKII-LEDTIRHSKLRFPRKFVTKYGDS--LSSPVLLMVPSGSTWHVEL--IKSDGDVWLQNGWKEFAEHYSLKHGHFLVFKYQGDCNF--QV 113 4444.489999999*********877..5557***********..********************************9999..88 PP EEE- CS B3 95 kvfr 98 +f+ Thecc1EG000518t1 114 LIFD 117 8886 PP
2	B3	55.1	1.4e-17	235	331	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ ++ ps+ + + l+lp +f++++ ++k + ++tl +++g++W k++ ++k + l GW F ++n+L+ gD++vF+l+++++ Thecc1EG000518t1 235 FVVEMQPSYINPGRKLCLPSSFITKCLKEKVG--DVTLCTLDGKTWPAKYCCyltNNKYTKAALHCGWTAFMQDNKLELGDVCVFELIEQTKI 325 5566777777888999********766666..79999*******6669888888899*********************9986555 PP ..EEEE CS B3 91 elvvkv 96 l+v + Thecc1EG000518t1 326 LLKVII 331 455555 PP
3	B3	64.1	2.2e-20	423	520	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ v+ p++ ++++ + +p kfa++h +ke ++l+ ++gr+W vk+++ +++++r + + W+ F+++n+L++gD++vF+l++r+e+ Thecc1EG000518t1 423 FKVVMQPAYLGARCSVNIPYKFAKRHVDEKED--RVILQVSNGRRWIVKFSVkvTNSGQRkARFYDTWRAFAQDNNLEVGDVCVFELINRDET 513 556778899999************666555..6***********8887555555699999********************99888 PP ..EEEEE CS B3 91 elvvkvf 97 +++v++f Thecc1EG000518t1 514 SFKVSIF 520 8899886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-27	19	119	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-25	20	119	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.76E-21	25	117	No hit	No description
PROSITE profile	PS50863	14.297	26	119	IPR003340	B3 DNA binding domain
SMART	SM01019	4.7E-18	27	119	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-16	29	117	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.4E-21	226	333	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.69E-21	230	335	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.09E-19	233	333	No hit	No description
SMART	SM01019	6.5E-12	235	335	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-16	235	333	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.689	235	335	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.7E-24	414	520	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.67E-21	416	520	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.07E-21	421	520	No hit	No description
SMART	SM01019	1.5E-11	423	518	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-17	423	520	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.861	423	520	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MASPSNKASC SQREINPSMF TPKTPHFFKI ILEDTIRHSK LRFPRKFVTK YGDSLSSPVL 60 LMVPSGSTWH VELIKSDGDV WLQNGWKEFA EHYSLKHGHF LVFKYQGDCN FQVLIFDMSA 120 SEIEYPHISP NMDRDEVCQE PNKEEDAKDD SVEVLYETPR VRKTRQNSQT PCLRPRKILR 180 RTTLSDKYKR DCEDVSSGEG YLKTKVPRGR HAFGDNENAT ALQRASAFKS ENFFFVVEMQ 240 PSYINPGRKL CLPSSFITKC LKEKVGDVTL CTLDGKTWPA KYCCYLTNNK YTKAALHCGW 300 TAFMQDNKLE LGDVCVFELI EQTKILLKVI IYRVSQDSSL VELYMFFPNV YWISIKLMYP 360 RLYNIMRTNG SGGLNSLANC DNGRLSTQGS TKSRHFLMPP LSSHEKARAM LRASSFRSEN 420 PFFKVVMQPA YLGARCSVNI PYKFAKRHVD EKEDRVILQV SNGRRWIVKF SVKVTNSGQR 480 KARFYDTWRA FAQDNNLEVG DVCVFELINR DETSFKVSIF *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MASPSNKASC SQREINPSMF TPKTPHFFKI ILEDTIRHSK LRFPRKFVTK YGDSLSSPVL  60
LMVPSGSTWH VELIKSDGDV WLQNGWKEFA EHYSLKHGHF LVFKYQGDCN FQVLIFDMSA  120
SEIEYPHISP NMDRDEVCQE PNKEEDAKDD SVEVLYETPR VRKTRQNSQT PCLRPRKILR  180
RTTLSDKYKR DCEDVSSGEG YLKTKVPRGR HAFGDNENAT ALQRASAFKS ENFFFVVEMQ  240
PSYINPGRKL CLPSSFITKC LKEKVGDVTL CTLDGKTWPA KYCCYLTNNK YTKAALHCGW  300
TAFMQDNKLE LGDVCVFELI EQTKILLKVI IYRVSQDSSL VELYMFFPNV YWISIKLMYP  360
RLYNIMRTNG SGGLNSLANC DNGRLSTQGS TKSRHFLMPP LSSHEKARAM LRASSFRSEN  420
PFFKVVMQPA YLGARCSVNI PYKFAKRHVD EKEDRVILQV SNGRRWIVKF SVKVTNSGQR  480
KARFYDTWRA FAQDNNLEVG DVCVFELINR DETSFKVSIF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	7e-15	217	520	27	144	B3 domain-containing transcription factor VRN1
4i1k_B	7e-15	217	520	27	144	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976630.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBL	A0A061DGP3	0.0	A0A061DGP3_THECC; AP2/B3-like transcriptional factor family protein, putative
STRING	EOX91272	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16925	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-41	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000518t1
Entrez Gene	18611041

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]