PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000606t1
Common NameTCM_000606
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 213aa    MW: 24980.6 Da    PI: 6.0693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000606t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1796143152
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                       ++y+GVr+++ +g+W+AeIrdp+    r  r++lg+f t+e Aa+a+++a+  
  Thecc1EG000606t1  96 THYRGVRQRP-WGKWAAEIRDPK----RaVRVWLGTFYTEEAAARAYDRAAVG 143
                       68********.**********83....57*********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.89E-1996156No hitNo description
PfamPF008474.3E-1196141IPR001471AP2/ERF domain
PROSITE profilePS5103224.27697154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3197155IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2197156IPR016177DNA-binding domain
SMARTSM003802.0E-3697160IPR001471AP2/ERF domain
PRINTSPR003671.1E-1098109IPR001471AP2/ERF domain
PRINTSPR003671.1E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENYNAGHLR ALTRAQEHEI MVSTLMQVIN VERPSTSVFA SSSRTDNVFN CSDTCVAMQL  60
NGNNEYFNSI FPPSQQRHQQ QQLPPRAQSN RRNKRTHYRG VRQRPWGKWA AEIRDPKRAV  120
RVWLGTFYTE EAAARAYDRA AVGFRGDKAK VNFPLSDYKK EREEEEEEEK KKEIPEEKDN  180
SHEEKGQNSK EKDDEEWQIF SDEEFRELMM MD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2294155264ATERF1
3gcc_A2e-2294155264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980350.11e-154PREDICTED: ethylene-responsive transcription factor ERF098
TrEMBLA0A061DGE21e-158A0A061DGE2_THECC; AP2/ERF domain-containing transcription factor-like protein
STRINGEOX914001e-159(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-24ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]