PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000610t1
Common NameTCM_000610
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 300aa    MW: 33286.9 Da    PI: 5.1594
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000610t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.49.9e-38101012102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+ ++++isw+eng++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF++++Fk+g+kell
  Thecc1EG000610t1  10 FLTKTYQLVDDPITDDVISWNENGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFKRGQKELL 93 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k+
  Thecc1EG000610t1  94 SEIRRRKT 101
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-62699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3703.6E-4149184IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PITDDVISWN ENGTTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANENFKRGQK ELLSEIRRRK TVTSSPANGK TAGVGPSSPT  120
NSGEDLGSTS TSSPDSKNPG SVETTPAAVT QFADLSDENE KLKKDNEMLS SELAQAKKQC  180
DELVAFLTEC VKVGPDQINR IMRQGSFGST RDADDRGRTH DVDDLDDHDQ VDDDDDDDDE  240
KGGKEGNGSL KLFGVWLKGA ERKRAREEKI VYGGPHAKEM KTVDFRHVPL VMKSGKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-27510416125Heat shock factor protein 1
5d5u_B8e-27510125131Heat shock factor protein 1
5d5v_B8e-27510125131Heat shock factor protein 1
5d5v_D8e-27510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024451e-177KJ702445.1 Gossypium hirsutum heat shock transcription factor (HSF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969852.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-121HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A061DGX90.0A0A061DGX9_THECC; Heat shock factor 4
STRINGEOX914070.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-99heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]