PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000663t1
Common NameTCM_000663
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 126aa    MW: 14429.4 Da    PI: 11.716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000663t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84e-18591186
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                      f k+l++ dv +++ l+lp k++++  g+     + l ++d +g +W +++++ rk+  + vl+ GW +Fvk++ L+ gD ++Fk++ 
  Thecc1EG000663t1  5 FTKKLSKTDVVEKR-LSLPTKYMKHLpGLRRGHAVNLPVMDVHGTEWHFRYSIrRKGHPKPVLSMGWGNFVKSKCLRPGDRIIFKMEA 91
                      89*********996.********555*99999999****************884444445*************************764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.32E-17391IPR015300DNA-binding pseudobarrel domain
CDDcd100176.95E-20490No hitNo description
PROSITE profilePS5086311.0824108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20491IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-55109IPR003340B3 DNA binding domain
PfamPF023621.5E-14591IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MALHFTKKLS KTDVVEKRLS LPTKYMKHLP GLRRGHAVNL PVMDVHGTEW HFRYSIRRKG  60
HPKPVLSMGW GNFVKSKCLR PGDRIIFKME ANVAAAPGPL YIIGVKRRMR LLGKEVWTAV  120
FLKRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472265.12e-55PREDICTED: B3 domain-containing transcription factor VAL3-like
TrEMBLA0A061DI233e-86A0A061DI23_THECC; Uncharacterized protein
STRINGEOX914916e-87(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2207145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35520.11e-09auxin response factor 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]