PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000725t1

Common Name

TCM_000725

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 316aa MW: 36097.7 Da PI: 10.5088

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000725t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.2	1.1e-23	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie k+ r++tf+kR++g+ KKA+ELS+LCd+eva+iifs+ gkl+ + Thecc1EG000725t1 9 KKIEHKTYRHITFAKRKTGLVKKAYELSTLCDVEVALIIFSPAGKLFLF 57 68*******************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.7E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.829	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-25	2	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-22	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-22	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGRVKVQLKK IEHKTYRHIT FAKRKTGLVK KAYELSTLCD VEVALIIFSP AGKLFLFDGK 60 KRVEEILAHH VELPARRRGW VQNQELIRRL ITQMSLEAGF ANHPSNTSRT NKMGIDSRFQ 120 EVQKKIVICI TQLEDVEKQL QCFLRNPSCL KSMREIQYHE MILEQTLKLV HFRKRFLEAN 180 CSVQPTPKGF GDTIRPQLIS CREKASAGGS ISQSLSYNLS WQSQNDLHAP RNQSNGLQPS 240 RNLPESLVEK LQSPMTYLQG HRYLARNEVS SKPEVDGYMH HWASGIVNAN FPPRMDIVQQ 300 ARATSNPAQR KRGVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
1tqe_R	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
1tqe_S	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
6byy_A	2e-15	1	72	1	71	MEF2 CHIMERA
6byy_B	2e-15	1	72	1	71	MEF2 CHIMERA
6byy_C	2e-15	1	72	1	71	MEF2 CHIMERA
6byy_D	2e-15	1	72	1	71	MEF2 CHIMERA
6c9l_A	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
6c9l_B	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
6c9l_C	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
6c9l_D	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
6c9l_E	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
6c9l_F	2e-15	1	72	1	71	Myocyte-specific enhancer factor 2B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976717.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
TrEMBL	A0A061DGV6	0.0	A0A061DGV6_THECC; Transmembrane isoform 1
STRING	EOX91585	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17254	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	8e-38	AGAMOUS-like 67

Link Out ? help Back to Top
Phytozome	Thecc1EG000725t1
Entrez Gene	18611226

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]