PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000835t1

Common Name

TCM_000835

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 187aa MW: 21691.4 Da PI: 10.1585

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000835t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5.1e-11	78	123	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN++L ++l Thecc1EG000835t1 78 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRIENRELTNRLR 123 5789*************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-12	74	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	76	122	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-11	78	126	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-9	78	149	No hit	No description
Pfam	PF00170	2.0E-8	78	123	IPR004827	Basic-leucine zipper domain
CDD	cd14702	7.37E-20	79	130	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MMSTVPANVS PEPMLSNDLF PAFESGFTPW DCSELFSTTL STGPARSGSG SDEPNQNQTN 60 SNSGSDEPNQ LVSIIDERKR RRMISNRESA RRSRMRKQKH LENLRNQVNR LRIENRELTN 120 RLRFVLYHCH RVRTDNDRLR SEYSMLQQKF WDIRQILLFK QLQQFSSAWP CNNVTAMSEQ 180 TPPLIT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	81	RKRRR
2	77	98	RKRRRMISNRESARRSRMRKQK
3	90	97	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047594.1	1e-136	PREDICTED: bZIP transcription factor 11
TrEMBL	A0A061DIP8	1e-135	A0A061DIP8_THECC; Basic leucine-zipper 5, putative
STRING	EOX91751	1e-135	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	5e-47	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Thecc1EG000835t1
Entrez Gene	18611325

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]