PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000878t1
Common NameTCM_000878
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26140.9 Da    PI: 7.3096
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000878t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.54e-195091849
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       rqv fskRr g++KKA EL++LC++e a+++fs+ gk + +
  Thecc1EG000878t1 50 ARQVAFSKRRSGLFKKARELCTLCAVETALVVFSPGGKAFSF 91
                      59***********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-233594IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.4743595IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-2336116IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-143757IPR002100Transcription factor, MADS-box
PfamPF003191.8E-204991IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-145772IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-147293IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQGFSLLCTS EWSSQTKRGL VSLNCSFSMA GLSSKGRRRT QMWMIPGADA RQVAFSKRRS  60
GLFKKARELC TLCAVETALV VFSPGGKAFS FGHPGVDTIM NRLPNLSKPD LEAIQCTEAE  120
YEASLRELNK EYSDIMEKLR AEKLRGERLK QMRMESQGQG QSLVERPVDE LNLEELLTLK  180
SMLEEFKVKL RKRMQELSVE AGALTLISAG EIDASLGGST EGNSSGDPCD HDVGHAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969785.11e-152PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A061DH791e-173A0A061DH79_THECC; Mads box protein, putative
STRINGEOX918041e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-35AGAMOUS-like 62
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]