PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000997t1

Common Name

TCM_000997

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 225aa MW: 25182.4 Da PI: 10.818

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000997t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	62	107	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR+ri + ++ Lr++lP++ K++Ka++L ++++ +++L Thecc1EG000997t1 62 RHRIAERHRRKRICQQYDILRSILPNL-----IKMDKASVLGETIRQVREL 107 599*********************9.....6**********988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.56	58	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.75E-6	61	112	No hit	No description
Pfam	PF00010	1.4E-6	62	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.55E-12	62	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-10	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-8	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVRLKQLEQD TQHPLGGYYS SALCSRPNSL SQQVIPTIDI LLKSLPRKTK SKAETNIANA 60 VRHRIAERHR RKRICQQYDI LRSILPNLIK MDKASVLGET IRQVRELKKR LKETKAVCRG 120 SLEGVLPGES DNLSLGYCES DGSLLKATFS CDDRAELISD LTRAVRTVNG RVVRAEMVFV 180 GGRNKSVLWV KGLSGNEGIC MLKRALKMAV DRPKMKNGKP RFTH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047802.2	1e-164	PREDICTED: transcription factor bHLH131
TrEMBL	A0A061DHI9	1e-163	A0A061DHI9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOX91959	1e-164	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13939	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	1e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000997t1
Entrez Gene	18611473

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]