PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001154t1
Common NameTCM_001154
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family EIL
Protein Properties Length: 454aa    MW: 51294.6 Da    PI: 4.7909
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001154t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN33343.6e-102172361234
                       XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
              EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLra 93 
                       +el+krmwkd+ +++ +k+++++   d+e+     +s+ ++e++rrkkmsraQD+iLk M+k++evc+aqGfvYgi+p+kgkpv+g+sdsLr+
  Thecc1EG001154t1  17 DELQKRMWKDRLRIQNMKQKRED---DQES-----QSEAREEASRRKKMSRAQDSILKSMVKIVEVCKAQGFVYGIVPDKGKPVTGSSDSLRK 101
                       79*************66665555...3443.....567899**************************************************** PP

                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT- CS
              EIN3  94 WWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelgl 186
                       WWkekv+fd+n+p a+++     +i ++++ +   + s  h l+elqDTtlgSLLsalmqhc+ppqrrfplekg++pPWWPtG+e wwge+g+
  Thecc1EG001154t1 102 WWKEKVHFDKNAPLAVAEFL--PAIIEQGELD---PASFMHLLQELQDTTLGSLLSALMQHCMPPQRRFPLEKGLAPPWWPTGNEIWWGEQGV 189
                       *****************983..3565655555...89******************************************************** PP

                       -TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSS CS
              EIN3 187 skdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskyl 234
                       ++++g+ppy+kphdlkkawkvsvL+avikhmsp+++++r+l    k+l
  Thecc1EG001154t1 190 AQEHGPPPYRKPHDLKKAWKVSVLAAVIKHMSPNLDRMRRLL-TEKCL 236
                       ***************************************985.44555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.7E-10317233No hitNo description
Gene3DG3DSA:1.10.3180.106.1E-54133236IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.27E-47136233IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEPGEDGEEE GEEIIYDELQ KRMWKDRLRI QNMKQKREDD QESQSEAREE ASRRKKMSRA  60
QDSILKSMVK IVEVCKAQGF VYGIVPDKGK PVTGSSDSLR KWWKEKVHFD KNAPLAVAEF  120
LPAIIEQGEL DPASFMHLLQ ELQDTTLGSL LSALMQHCMP PQRRFPLEKG LAPPWWPTGN  180
EIWWGEQGVA QEHGPPPYRK PHDLKKAWKV SVLAAVIKHM SPNLDRMRRL LTEKCLKISP  240
AKDDGGGDDS EHINTDDKGK HAEKIASSGE KRKCNFEREV TLNTLYACQN VKCPQSALEL  300
GFGDRSSRTD HESNCAYRSE VSDINQEDNE ESDISGKILP YGHYSFGPQT KLHTDSMDGT  360
QSTLSMTGWP DMELAKANDR QGIMQMNEVE DISGITSQNY IDYLGAAIED LPLPAEFLIQ  420
RGDMDWNMCQ LLRENSDDQG STSIWDMGFD GLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-451342371105Protein ETHYLENE INSENSITIVE 3
4zds_B3e-451342371105Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972414.10.0PREDICTED: LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-120EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A061DI370.0A0A061DI37_THECC; Transcription factor, putative
STRINGEOX921590.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-111EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]