PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001181t2
Common NameTCM_001181
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 601aa    MW: 66752.8 Da    PI: 6.2013
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001181t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13e-20858151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie+ ++ qvtfskRr  +l KA+E+Sv Cd++va++ fs++g++  ++s
  Thecc1EG001181t2  8 KRIEDVTRCQVTFSKRRSSLLRKANEISVFCDVDVALVAFSPSGRVSKFCS 58
                      79*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.035160IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-19159IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-16222IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-23381IPR002100Transcription factor, MADS-box
PfamPF003194.1E-18956IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-162237IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-163758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MDNKPEMKRI EDVTRCQVTF SKRRSSLLRK ANEISVFCDV DVALVAFSPS GRVSKFCSRE  60
RIEDVLERYV KLAPDKRYQH VRCLEWKLQK MKQLDCIRGD ENKLLHLDNQ IKNLELQIKK  120
TTIELEILQT NLKEYELENV EGASLAQILW CEKNLKAALQ GIMDRKKRLL NETYPSLGQT  180
RLQRRGQTPF AYNFPGNQVL NRARQNLNSR SRLLMQHNPR TWPYSSRVHK SLLDQRYQPR  240
GISVGVPGAS SSFAFNPLAA SFPAIYQHPS FTQRTEIPPT YHPIQHQPFL WDPTAASIQN  300
LQLGVYGNSS MHQEIIGNPA FNCVPYQPPG TLGTSNLYQP IMPGILDQQL GVLGSSSVQL  360
MREDQITPGI PNQQLGALGD SFPDQSLIGV GTTPYAQFQQ AGVLGSPSVG RLANVEPLGP  420
QKNPTPTPYH NYNNSNTHKD VSSLPSTSQL QVDPNEMNLH LLGSPSYNTS QNLVATPLLN  480
SERVSSEPVF TNNIGSITTP THGDGDNANN GSSGGTSNSN NGNNGIDNCD TNEKHPACLT  540
QENPPPESPT DSMFLNSLLN EAAIENDTSQ PAGNQEDSFI DWDGFTLAEN LNLEDFEIIF  600
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048033.20.0PREDICTED: uncharacterized protein LOC18611623 isoform X2
RefseqXP_017971852.10.0PREDICTED: uncharacterized protein LOC18611623 isoform X3
TrEMBLA0A061DJR80.0A0A061DJR8_THECC; Uncharacterized protein isoform 2
STRINGEOX921900.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-26AGAMOUS-like 66
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]