PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001335t1
Common NameTCM_001335
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 339aa    MW: 38279.1 Da    PI: 9.4512
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001335t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF534.5e-17951143
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      k+i  +  r  t+ kR++g++KKA+E S+LC++e +vii++++
  Thecc1EG001335t1  9 KFITKEKIRVSTYQKRKKGLIKKAHEFSILCGVETCVIIYGPQ 51
                      57888888999******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-16164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.04149IPR002100Transcription factor, MADS-box
CDDcd001202.19E-20250No hitNo description
SuperFamilySSF554558.37E-20290IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRGKMNMKF ITKEKIRVST YQKRKKGLIK KAHEFSILCG VETCVIIYGP QLKDGPAKLE  60
IWPSDPAKVM HVINKYKGKP LDVRERKCFN VFDFFAIRQK KLDDEICKLR KANIDAKFST  120
WDDRINNFSI NQIWALLARF DSNLEAASKK IKMIKGNHQC LIEDSKSGIL TGPSTQARLN  180
HSNQARPCLF QKNLDLEVTS RQQPMSGLKP FDMNIVPSFY PFVSGEALQM QPFNVNPIDN  240
SMMLSTNGSD FTQVDGESSS SITYSSLSPQ ACYDPSASML DNVMFNNPWG VPICFYGPFM  300
QAMTPFGQSA MPSFPFQYGE IYRDADDQCG SKSKKPKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11225KEKIRVSTYQKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972470.10.0PREDICTED: agamous-like MADS-box protein AGL103
TrEMBLA0A061DIN10.0A0A061DIN1_THECC; MADS-box transcription factor family protein, putative
STRINGEOX923800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16227914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-28M-type_MADS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]