PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001435t1
Common NameTCM_001435
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 224aa    MW: 25367.6 Da    PI: 6.1608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001435t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09119159954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Thecc1EG001435t1 119 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 159
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-15115178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-10116164No hitNo description
Gene3DG3DSA:4.10.280.101.5E-12116172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6120159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDINQTKLPS HTWNLEMSTE DHILHEQVPL NPIWPSYPLQ THQTPSSTSS QIPSATNVYS  60
DQMGQLAEEE EETEEELSAM KEMLYKIAAM QPVDIDPATI RKPKRRNVRI SDDPQSVAAR  120
HRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIRLLQPNN QQPPCHVNWQ  180
VTPNKPLVST SSTSMETQQA GPEFTFGGNG GNPLCFNHEV IND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048332.21e-167PREDICTED: transcription factor HEC3
TrEMBLA0A061DIQ01e-166A0A061DIQ0_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOX924891e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.17e-50bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]