PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001514t1

Common Name

TCM_001514

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 201aa MW: 23141.3 Da PI: 4.3597

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001514t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.2	1.7e-32	10	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF Ptdeelv ++L +k+ +++ ++i+e+d++ ++Pw+L+ k+ + ++++fF++ +nr+ ++gyWk+ ++++++ Thecc1EG001514t1 10 LPPGFRFCPTDEELVLHFLYPKALLLPCHP-NIIPELDLHLLHPWELNGKALLSGNHCFFFTQM--------MENRVLENGYWKQLDTEEPIF 93 79***********************999.89***********9666678899999986........4589*************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+++g+kk +vfy ++ap g +t+W+m+ey+l Thecc1EG001514t1 94 GGAGKKIGMKKFFVFYINEAPFGIETNWLMQEYHL 128 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-43	7	157	IPR003441	NAC domain
PROSITE profile	PS51005	37.673	10	159	IPR003441	NAC domain
Pfam	PF02365	4.1E-21	11	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEMKDGCINL PPGFRFCPTD EELVLHFLYP KALLLPCHPN IIPELDLHLL HPWELNGKAL 60 LSGNHCFFFT QMMENRVLEN GYWKQLDTEE PIFGGAGKKI GMKKFFVFYI NEAPFGIETN 120 WLMQEYHLCN WDSTLTSYKT TGNQKLDCSK WVLCRVEESK GNSQSFSYSD EDDGTELSCL 180 DEMFLSMDDD LDDISSSKFF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	8	164	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	8	164	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	8	164	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	8	164	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	8	164	18	173	NAC domain-containing protein 19
3swm_B	1e-32	8	164	18	173	NAC domain-containing protein 19
3swm_C	1e-32	8	164	18	173	NAC domain-containing protein 19
3swm_D	1e-32	8	164	18	173	NAC domain-containing protein 19
3swp_A	1e-32	8	164	18	173	NAC domain-containing protein 19
3swp_B	1e-32	8	164	18	173	NAC domain-containing protein 19
3swp_C	1e-32	8	164	18	173	NAC domain-containing protein 19
3swp_D	1e-32	8	164	18	173	NAC domain-containing protein 19
4dul_A	1e-32	8	164	15	170	NAC domain-containing protein 19
4dul_B	1e-32	8	164	15	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048423.2	1e-147	PREDICTED: NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-56	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A061DJ46	1e-147	A0A061DJ46_THECC; Xylem NAC domain 1, putative
STRING	EOX92580	1e-148	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	9e-52	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Thecc1EG001514t1
Entrez Gene	18611886

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]