PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001531t1

Common Name

TCM_001531

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 278aa MW: 32068.8 Da PI: 7.5655

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001531t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.2	1.5e-55	100	195	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yv+plk+yl+kyr++e Thecc1EG001531t1 100 KEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVAPLKLYLSKYRDIE 192 89******************************************************************************************* PP NF-YB 95 gek 97 gek Thecc1EG001531t1 193 GEK 195 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.7E-54	95	223	IPR009072	Histone-fold
SuperFamily	SSF47113	1.37E-40	102	227	IPR009072	Histone-fold
Pfam	PF00808	9.5E-28	105	169	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-19	133	151	No hit	No description
PROSITE pattern	PS00685	0	136	152	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.3E-19	152	170	No hit	No description
PRINTS	PR00615	3.3E-19	171	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MQNLGFLFNC LLLCVSFHLF QSHKIPNHPL TKLETWLVSP KHCDCERYCY YYYWKEMEGE 60 SHGNVPHGPN KRSPESPCVK SSGSRNNNNQ NNNHPDNNNK EQDRFLPIAN VGRIMKKVIP 120 SNGKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI NGDDIIWAIT TLGFEEYVAP 180 LKLYLSKYRD IEGEKLNIPK QQRSEQKQQQ QQQQPQQQQS EHEHNLPYNS SVYSSTNLLS 240 HHPSFVPSDQ PFSLPFSSNS IQKQLQQQDQ IDSMGHW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-42	100	190	3	93	NF-YB
4awl_B	1e-42	100	190	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-42	100	190	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021274339.1	1e-148	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	2e-68	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A061DJQ8	0.0	A0A061DJQ8_THECC; Nuclear transcription factor Y subunit B-7
STRING	EOX92602	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	6e-63	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	Thecc1EG001531t1
Entrez Gene	18611900

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]