PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001541t1
Common NameTCM_001541
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 249aa    MW: 28431.1 Da    PI: 5.4526
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001541t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86e-18183218136
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                       Cs+C + +Tp+WR gp+g+ktLCnaCG++y++ +l+
  Thecc1EG001541t1 183 CSHCLSENTPQWRMGPSGPKTLCNACGVRYKSGRLM 218
                       ********************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.991177213IPR000679Zinc finger, GATA-type
SMARTSM004019.4E-17177227IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-13179239No hitNo description
Gene3DG3DSA:3.30.50.106.5E-14181215IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.51E-14182233No hitNo description
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15183218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVCFRTLSQC FVICFCFAFC FVSCSSMAVE NINCSDSNNN NTVLSLSADE IEEFSSLEST  60
KLCVPQDPLE DLDWLPDFTD EIISLDGFCL TPEHEINFSY VSPNSYEGPE QKTTEDIDDD  120
YSAWESKRPR SVFEQSITFT KKKRRKRGGK RVWETRDFAL VADDKEAIVV GEEWNCRNVR  180
RTCSHCLSEN TPQWRMGPSG PKTLCNACGV RYKSGRLMPE YRPAASPTFD ITKHSNFHKK  240
ILKRKGFE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144KKKRR
2140145KKKRRK
3140146KKKRRKR
4141145KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048465.21e-164PREDICTED: GATA transcription factor 7
TrEMBLA0A061DJT10.0A0A061DJT1_THECC; GATA transcription factor 9-like protein
STRINGEOX926220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-33GATA transcription factor 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]