PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001660t1
Common NameTCM_001660
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ZF-HD
Protein Properties Length: 254aa    MW: 27800.5 Da    PI: 9.1808
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001660t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.68.4e-3048103258
       ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                       + vrY+eClkNhAa++Gg+a+DGCgEf+ps geeg+ +a+kC+AC+CHRnFHR+e e
  Thecc1EG001660t1  48 KVVRYRECLKNHAAAMGGNATDGCGEFLPS-GEEGSLEAFKCSACNCHRNFHRKEIE 103
                       679**************************9.999********************986 PP
2Homeobox162e-05187243153
                       TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +r Rt+ft+eq e + ++ e    + ++++++  ++  +++g++ r+ kvW +N ++
  Thecc1EG001660t1 187 KRFRTKFTQEQKEKMLNFAEkagwRIQKLDESVVQQFCQEIGIKRRVLKVWMHNNKQ 243
                       789************88666666679****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.5E-2850102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2350103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-2951102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1952101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-31173248IPR009057Homeodomain-like
SuperFamilySSF466893.59E-21174247IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-28186243IPR006455Homeodomain, ZF-HD class
CDDcd000860.00195187248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNSASPRKEK DMPISRNCGG NGHIIFSSGV GTGPPSPSME ENLRAHKKVV RYRECLKNHA  60
AAMGGNATDG CGEFLPSGEE GSLEAFKCSA CNCHRNFHRK EIECDCPFDC YHSALLNNAT  120
GRKLILGTPH HNYILGASAA AGTLISSRAE PPHQMIMSYK GGSVPSETDE KDDGGGGAAR  180
VSGKMRKRFR TKFTQEQKEK MLNFAEKAGW RIQKLDESVV QQFCQEIGIK RRVLKVWMHN  240
NKQSLAKKDS SEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241872441875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048627.20.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotO647221e-67ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A061DJE20.0A0A061DJE2_THECC; Homeobox protein 21, putative
STRINGEOX927840.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.18e-70homeobox protein 21
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]