PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001942t2

Common Name

TCM_001942

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 103aa MW: 12044 Da PI: 11.2568

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001942t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.1	6.1e-31	37	90	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av+ LGG+ kAtPk+il++m+vkgL ++h+kSHLQ+YR Thecc1EG001942t2 37 PRLRWTPELHHQFVQAVDCLGGKYKATPKRILQMMSVKGLRISHIKSHLQMYRR 90 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.445	33	93	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-28	34	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-15	37	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-23	37	91	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-9	38	89	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
DQQHQLVKSL HSDELRMTKN SRRPGTGVRS YNKSDLPRLR WTPELHHQFV QAVDCLGGKY 60 KATPKRILQM MSVKGLRISH IKSHLQMYRR SKLETSVFRL YL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	38	92	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048942.2	2e-58	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	1e-27	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A061DK40	2e-69	A0A061DK40_THECC; Homeodomain-like superfamily protein isoform 2 (Fragment)
STRING	EOX93099	3e-70	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	6e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001942t2
Entrez Gene	18612212

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]