PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002514t1

Common Name

TCM_002514

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 135aa MW: 14798.8 Da PI: 6.0924

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002514t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.9	2e-12	101	125	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt+eLH+ Fv+av+qLGG++ Thecc1EG002514t1 101 KPRLRWTHELHAYFVDAVNQLGGPH 125 79*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-10	99	126	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MAEIVSEMQS VLMENNVPSQ NYDELKRVVL GKQMAGPRTG ANGNTQDDQQ LQGGDNNTLL 60 ALQEIQGPST PVKINGNHVV GNEVVEKVKE KPKIMVTNDL KPRLRWTHEL HAYFVDAVNQ 120 LGGPHSQCSF PLIL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491750.1	1e-40	PREDICTED: uncharacterized protein LOC105803878
Refseq	XP_017634379.1	5e-41	PREDICTED: uncharacterized protein LOC108476618
TrEMBL	A0A061DNI7	2e-94	A0A061DNI7_THECC; Uncharacterized protein
STRING	EOX93626	4e-95	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21949	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-10	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG002514t1
Entrez Gene	18612547

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]