PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002647t2

Common Name

TCM_002647

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 182aa MW: 21364.6 Da PI: 10.8344

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002647t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.3	4.2e-31	12	100	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+p Thecc1EG002647t2 12 FYDAYATRVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHQLVP 100 9*****************************************99.9**************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-29	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEFESEEAAK VFYDAYATRV GFIMRVDAFR RSMRDGKVVW RRLVCNKEGF RKLRPRRSEN 60 RKPRAITREG CKAMIVVKKE KTGKWVVTRF VKEHNHQLVP IPTSGRRSML LSQTPDEKDV 120 KIRELTAELQ RERKRSAAFQ EQLDMVLREM EEHSNQLSRN IDDIVQSVRE IESKRVALSQ 180 S*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007049563.2	1e-131	PREDICTED: protein FAR1-RELATED SEQUENCE 1
Swissprot	Q9SZL8	2e-29	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061DM22	1e-129	A0A061DM22_THECC; Far-red impaired responsive family protein isoform 1 (Fragment)
TrEMBL	A0A061DNU2	1e-129	A0A061DNU2_THECC; Far-red impaired responsive family protein isoform 2
STRING	EOX93720	1e-129	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-89	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG002647t2
Entrez Gene	18612616

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]