PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002653t2

Common Name

TCM_002653

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 217aa MW: 24934.3 Da PI: 8.7962

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002653t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.7e-27	51	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + +++r++ r gCka++ vk+ek+gkw+vt++++eHnH+l Thecc1EG002653t2 51 KFYVEYARQVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVVTRFVKEHNHPLI 140 6********************************************9**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-25	51	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MYRSTKLMHV DLDKEVGTVD SSEEKTAEPE GREILEPYVG MEFESEDDAR KFYVEYARQV 60 GFVVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNHKGTFGP DKKPRPSARE GCKATILVKM 120 EKTGKWVVTR FVKEHNHPLI ATANGFSTTG DKDKKIEELS MELAHQEQLC SAYREKLFTF 180 MNNVEEQTEE LSSKIQVIVD NVRKLESETQ RFSHRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007049566.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
TrEMBL	A0A061DUS5	1e-160	A0A061DUS5_THECC; Far-red impaired responsive family protein isoform 2
STRING	EOX93722	1e-151	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	3e-75	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG002653t2
Entrez Gene	18612617

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]