PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002654t1

Common Name

TCM_002654

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 259aa MW: 30048 Da PI: 5.5022

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002654t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.2	1.8e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ kw+vtk+++eHnH+l+ Thecc1EG002654t1 78 EFYVVYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKFVKEHNHSLM 168 6****************************************99983333.244899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-23	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MESSSSQGID SDESVRCLQV ENFDEQELVD HDLSDNIELC MGEVDKIIEE STESLPLLSN 60 AVEPYIGMEF KSRDAAREFY VVYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK 120 KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGSAK 180 NLISEDEKDQ RIRELTQELN SEKQKCKRRC AAYQEQLRTI LKFVEEHTDQ LSKRVQDIVE 240 NIRELEDAQL EDSDCSYV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007049567.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974334.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974337.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974345.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974350.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974355.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974361.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017974370.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061DMV3	0.0	A0A061DMV3_THECC; Far-red impaired responsive family protein isoform 1
STRING	EOX93728	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-40	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG002654t1
Entrez Gene	18612618

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]