PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002656t1

Common Name

TCM_002656

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 218aa MW: 25270.6 Da PI: 9.8657

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002656t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	75	95	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k Fs++ L H++ H Thecc1EG002656t1 75 CKYCNKKFSNSQALGGHQNAH 95 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.77E-7	70	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.5E-5	71	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.988	73	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSNKVSWEDL QDKRMRVKAH EAKLSMEPKL ELRLWNNNEV HQESRKVLNW LDSLDKRPWN 60 ILEPINKEQK REFLCKYCNK KFSNSQALGG HQNAHKRERA LSRKEKGRMD LYNPYGHICS 120 HLCDPFSPMA RVPNPETSQK SLRTNVEAMI QKPYNDSPGY VNNPNFMSSQ IAMPPSDDHF 180 YWSPGGDLSQ PATTPFHSRA PPFKNFGGFQ NTNLHKF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022760054.1	2e-57	zinc finger protein 1-like
TrEMBL	A0A061DMV7	1e-162	A0A061DMV7_THECC; Uncharacterized protein
STRING	EOX93732	1e-163	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21300	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	2e-14	zinc finger protein 3

Link Out ? help Back to Top
Phytozome	Thecc1EG002656t1
Entrez Gene	18612620

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]