PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG003548t1
Common NameTCM_003548
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 229aa    MW: 25380.6 Da    PI: 9.3049
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG003548t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601087.4e-3417112195
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       aCaaCk++r+kC ++C+lapyfpa+++++f++vhk+FG+sn +k+++++++ee r+++++sl++eA +r++dPv G +g ++k+ ++l   k+
  Thecc1EG003548t1  17 ACAACKHQRKKCDENCILAPYFPADRSREFQAVHKVFGVSNATKIVRNANTEEdRKRVADSLIWEAFCRQKDPVLGPYGEYRKIYEELTLYKS 109
                       7************************************************77766*******************************99998887 PP

            DUF260  93 ela 95 
                       + +
  Thecc1EG003548t1 110 QNQ 112
                       765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.01716118IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-3217113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MQRNNNNGVA AAGVHPACAA CKHQRKKCDE NCILAPYFPA DRSREFQAVH KVFGVSNATK  60
IVRNANTEED RKRVADSLIW EAFCRQKDPV LGPYGEYRKI YEELTLYKSQ NQMMLLQVQG  120
RGDEAAAAAA AAFKMPPAVA EWNNNSNKRI DVKGAFNNAA LRYDHGDSLV HFTTYGYPSQ  180
SDKPAVQEKG IHNATTLVPL QYYASGNLNL PTSHFQRKTT STPLHPVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-1718951288LOB family transfactor Ramosa2.1
5ly0_B8e-1718951288LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281303.11e-152LOW QUALITY PROTEIN: LOB domain-containing protein 28
TrEMBLA0A061DQ451e-172A0A061DQ45_THECC; LOB domain-containing protein 2
STRINGEOX941711e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105392635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-40LOB domain-containing protein 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]