PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004127t1

Common Name

TCM_004127

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 183aa MW: 20470.3 Da PI: 4.9146

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004127t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Thecc1EG004127t1 32 YECVFCKRGFTTAQALGGHMNIH 54 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.5E-4	30	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.43E-6	30	58	No hit	No description
PROSITE profile	PS50157	10.99	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEANQLEDSK SSSEETDRSE QSNDDMGTGR SYECVFCKRG FTTAQALGGH MNIHRKDRAK 60 SRPSSVPIVS GKADENLNYA SLMSYSYPPI QSQPHYSMVP EVHVSYQAFF PAPGWGFRPP 120 HTHHSDELYV DNSQHLNPFG EDWPSSLNLR IGPSRVDDEN KKTDGSSQED ELDLELRLGH 180 DP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050365.1	1e-135	PREDICTED: transcriptional regulator TAC1
TrEMBL	A0A061DQ22	1e-134	A0A061DQ22_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	EOX94522	1e-135	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15373	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	7e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG004127t1
Entrez Gene	18613190

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]