PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004130t1
Common NameTCM_004130
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 221aa    MW: 24757.4 Da    PI: 8.74
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004130t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-055678123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H+++H
  Thecc1EG004130t1 56 YTCSFCKREFRSAQALGGHMNVH 78
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-75382No hitNo description
Gene3DG3DSA:3.30.160.607.1E-45480IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.245683IPR007087Zinc finger, C2H2
SMARTSM003550.00385678IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-75680IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVFLFLMLLE SISKQQCSME KAYLTRNKNS KWDCNSSSLE GDHSCCCALT WPPKSYTCSF  60
CKREFRSAQA LGGHMNVHRK DRARLRLLSS WALECQNPEP NSMPSPSSSP ISLSSHSVNF  120
SLYPHHSLLS PLLSAPSSSP PPYRENLRKP LIPQLGGLSK EKTMTPFLGV EKLKRHAQKY  180
ELEVGGVTGV DLESEFKDSK EVLDLELRLG YFSVQSAFRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-135178229superman protein
2l1o_A1e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281233.11e-119transcriptional regulator SUPERMAN-like
TrEMBLA0A061DNX71e-159A0A061DNX7_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOX945241e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-19C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]