PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004569t1

Common Name

TCM_004569

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 567aa MW: 61874.1 Da PI: 9.0085

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004569t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Thecc1EG004569t1 91 FVCEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	15.4	5.2e-05	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Thecc1EG004569t1 167 WKCDKCSKKYAVQSDWKAHQKTC 189 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-5	90	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.25E-8	90	113	No hit	No description
SMART	SM00355	0.017	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	91	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	132	162	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.7E-5	155	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.25E-8	162	188	No hit	No description
SMART	SM00355	94	167	187	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MSNISGDDRS FSSGNTGEEV QQLEQKQQKQ QLQNNFPGSG SGPSGASNSN GSTSQQPHQP 60 VKKKRNLPGT PDPNAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR 120 QRTTTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS 180 DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGLM NHMGSNLQNQ 240 MPELMSSMPI SNANTSMGIS DFNNFDPKNP LKSLPQELVP MPFKSMNMGG GMFSSSSGTL 300 FGGPRSISAA SSSLQLSSNS SSGFNYLQDS KNGCQIAGSP NMSATALLQK AAQMGATASN 360 SINSPVMQKS FANSIAGTDQ SIRPLSFGGI QQQNTSYDHF PSQTDQSSMV GISEGGFSNP 420 LMQKSPNEMT QLFNAVTGSS ANLNDMGMYA SMFINGADRN QSLMKNMEHE DSGSTSLLQG 480 RTPAMERNPT GPSIFGASTT GGSNMTTLDF MGIGGSRQQA NLHEQQHQHQ RLELEAISQQ 540 RLPIINPFQQ QLSHGDSVIE KPIWDV*

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MSNISGDDRS FSSGNTGEEV QQLEQKQQKQ QLQNNFPGSG SGPSGASNSN GSTSQQPHQP  60
VKKKRNLPGT PDPNAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR  120
QRTTTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS  180
DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGLM NHMGSNLQNQ  240
MPELMSSMPI SNANTSMGIS DFNNFDPKNP LKSLPQELVP MPFKSMNMGG GMFSSSSGTL  300
FGGPRSISAA SSSLQLSSNS SSGFNYLQDS KNGCQIAGSP NMSATALLQK AAQMGATASN  360
SINSPVMQKS FANSIAGTDQ SIRPLSFGGI QQQNTSYDHF PSQTDQSSMV GISEGGFSNP  420
LMQKSPNEMT QLFNAVTGSS ANLNDMGMYA SMFINGADRN QSLMKNMEHE DSGSTSLLQG  480
RTPAMERNPT GPSIFGASTT GGSNMTTLDF MGIGGSRQQA NLHEQQHQHQ RLELEAISQQ  540
RLPIINPFQQ QLSHGDSVIE KPIWDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-34	163	226	3	66	Zinc finger protein JACKDAW
5b3h_F	7e-34	163	226	3	66	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050834.2	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A061DSA6	0.0	A0A061DSA6_THECC; Indeterminate(ID)-domain 2
STRING	EOX94991	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15443	8	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-100	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Thecc1EG004569t1
Entrez Gene	18613503

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]