PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005120t1

Common Name

TCM_005120

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 182aa MW: 20278.3 Da PI: 5.6255

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005120t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.4	5.9e-39	27	124	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C +C+lapyfp+++ +kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG++g i++lq+ +++l + Thecc1EG005120t1 27 PCAACKMLRRRCDGKCILAPYFPSDEIEKFAGVHKVFGASNVIKMIQMVEETNREDAAKALVYEATARIRDPVYGSTGAIFQLQKMVQELTMQ 119 7******************************************************************************************** PP DUF260 94 lallk 98 l+++k Thecc1EG005120t1 120 LESTK 124 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.274	26	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-39	27	124	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDFGYGTFSE SSKMGLEALA RARTHQPCAA CKMLRRRCDG KCILAPYFPS DEIEKFAGVH 60 KVFGASNVIK MIQMVEETNR EDAAKALVYE ATARIRDPVY GSTGAIFQLQ KMVQELTMQL 120 ESTKALVLEL QHQKDQLLGI LLNVNHRDPL SPIDGGSFSL DHDDSMAYDP AKFPVECDWI 180 F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	27	128	11	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	27	128	11	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007051513.1	1e-135	PREDICTED: LOB domain-containing protein 25
Swissprot	Q9LQR0	1e-41	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A061DSL0	1e-134	A0A061DSL0_THECC; LOB domain-containing protein 11
STRING	EOX95670	1e-135	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18630	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-44	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Thecc1EG005120t1
Entrez Gene	18613955

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]